PGSEA

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PGSEA.

Parametric Gene Set Enrichment Analysis

DOI: 10.18129/B9.bioc.PGSEA

Bioconductor version: 3.6

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Citation (from within R, enter citation("PGSEA")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")

HOWTO: PGSEA PDF R Script

HOWTO: PGSEA Example Workflow PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, Software

Version 1.52.0

In Bioconductor since BioC 2.0 (R-2.5) (17 years)

License GPL-2

Depends R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)

Imports

System Requirements

URL

Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma

Linking To

Enhances

Depends On Me GeneExpressionSignature

Imports Me

Suggests Me gskb

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PGSEA_1.52.0.tar.gz

Windows Binary PGSEA_1.52.0.zip

Mac OS X 10.11 (El Capitan) PGSEA_1.52.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/PGSEA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PGSEA

Package Short Url https://bioconductor.org/packages/PGSEA/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive