MiChip

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see MiChip.

MiChip Parsing and Summarizing Functions

Bioconductor version: 3.6

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

Author: Jonathon Blake <blake at embl.de>

Maintainer: Jonathon Blake <blake at embl.de>

Citation (from within R, enter citation("MiChip")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MiChip")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiChip")

MiChip miRNA Microarray Processing PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, Preprocessing, Software

Version 1.32.0

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License GPL (>= 2)

Depends R (>= 2.3.0), Biobase

Imports Biobase

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MiChip_1.32.0.tar.gz

Windows Binary MiChip_1.32.0.zip

Mac OS X 10.11 (El Capitan) MiChip_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MiChip

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MiChip

Package Short Url https://bioconductor.org/packages/MiChip/

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Old Source Packages for BioC 3.6 Source Archive