LVSmiRNA

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LVSmiRNA.

LVS normalization for Agilent miRNA data

DOI: 10.18129/B9.bioc.LVSmiRNA

Bioconductor version: 3.6

Normalization of Agilent miRNA arrays.

Author: Stefano Calza, Suo Chen, Yudi Pawitan

Maintainer: Stefano Calza <stefano.calza at unibs.it>

Citation (from within R, enter citation("LVSmiRNA")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("LVSmiRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LVSmiRNA")

LVSmiRNA PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AgilentChip, Microarray, OneChannel, Preprocessing, Software

Version 1.28.0

In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)

License GPL-2

Depends R (>= 3.1.0), methods, splines

Imports BiocGenerics, stats4, graphics, stats, utils, MASS, Biobase, quantreg, limma, affy, SparseM, vsn, zlibbioc

System Requirements

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Enhances parallel, snow, Rmpi

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LVSmiRNA_1.28.0.tar.gz

Windows Binary LVSmiRNA_1.28.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) LVSmiRNA_1.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/LVSmiRNA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LVSmiRNA

Package Short Url https://bioconductor.org/packages/LVSmiRNA/

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Old Source Packages for BioC 3.6 Source Archive