LINC

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LINC.

co-expression of lincRNAs and protein-coding genes

DOI: 10.18129/B9.bioc.LINC

Bioconductor version: 3.6

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.

Author: Manuel Goepferich, Carl Herrmann

Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>

Citation (from within R, enter citation("LINC")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("LINC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiologicalQuestion, GeneExpression, GeneRegulation, Software

Version 1.6.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License Artistic-2.0

Depends R (>= 3.3.1), methods, stats

Imports Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA

System Requirements

URL

Suggests RUnit, BiocGenerics, knitr, biomaRt

Linking To Rcpp

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LINC_1.6.0.tar.gz

Windows Binary LINC_1.6.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) LINC_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/LINC

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LINC

Package Short Url https://bioconductor.org/packages/LINC/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive