Heatplus

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see Heatplus.

Heatmaps with row and/or column covariates and colored clusters

Bioconductor version: 3.6

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Author: Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

Citation (from within R, enter citation("Heatplus")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Heatplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Heatplus")

Annotated and regular heatmaps PDF R Script

Commented package source PDF R Script

Old functions (deprecated) PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, Software, Visualization

Version 2.24.0

In Bioconductor since BioC 1.8 (R-2.3) (18 years)

License GPL (>= 2)

Depends

Imports graphics, grDevices, stats, RColorBrewer

System Requirements

URL https://github.com/alexploner/Heatplus

Bug Reports https://github.com/alexploner/Heatplus/issues

Suggests Biobase, hgu95av2.db, limma

Linking To

Enhances

Depends On Me GeneAnswers, phenoTest, tRanslatome

Imports Me

Suggests Me mtbls2, RforProteomics

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Heatplus_2.24.0.tar.gz

Windows Binary Heatplus_2.24.0.zip

Mac OS X 10.11 (El Capitan) Heatplus_2.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Heatplus

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Heatplus

Package Short Url https://bioconductor.org/packages/Heatplus/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive