GoogleGenomics

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GoogleGenomics.

R Client for Google Genomics API

DOI: 10.18129/B9.bioc.GoogleGenomics

Bioconductor version: 3.6

Provides an R package to interact with the Google Genomics API.

Author: Cassie Doll, Nicole Deflaux

Maintainer: Siddhartha Bagaria <bagaria.siddhartha at gmail.com>

Citation (from within R, enter citation("GoogleGenomics")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GoogleGenomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Genetics, Software, ThirdPartyClient

Version 2.0.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License Apache License (== 2.0) | file LICENSE

Depends R (>= 3.1.0), GenomicAlignments(>= 1.0.1), VariantAnnotation

Imports Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson, Rsamtools, S4Vectors(>= 0.9.25), Biobase, methods, utils

System Requirements GNU make

URL https://cloud.google.com/genomics/

Bug Reports https://github.com/Bioconductor/GoogleGenomics/issues

Suggests BiocStyle, RProtoBuf, httpuv, knitr, rmarkdown, testthat, ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GoogleGenomics_2.0.0.tar.gz

Windows Binary GoogleGenomics_2.0.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) GoogleGenomics_2.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GoogleGenomics

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GoogleGenomics

Package Short Url https://bioconductor.org/packages/GoogleGenomics/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive