GenomicDataCommons

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see GenomicDataCommons.

NIH / NCI Genomic Data Commons Access

Bioconductor version: 3.6

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Davis Sean [aut, cre]

Maintainer: Davis Sean <sdavis2 at mail.nih.gov>

Citation (from within R, enter citation("GenomicDataCommons")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GenomicDataCommons")

For older versions of R, please refer to the appropriate Bioconductor release.

Reference Manual PDF

Version 1.2.0

In Bioconductor since BioC 3.5 (R-3.4) (7 years)

License Artistic-2.0

Depends R (>= 3.4.0), magrittr

Imports stats, httr, xml2, jsonlite, utils, lazyeval, readr, data.table, GenomicRanges, IRanges

System Requirements

Suggests BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Mac OS X 10.11 (El Capitan) GenomicDataCommons_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GenomicDataCommons

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenomicDataCommons

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive