DMCHMM

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see DMCHMM.

Differentially Methylated CpG using Hidden Markov Model

Bioconductor version: 3.6

DMCHMM is a novel profiling tool for identifying differentially methylated CpG sites using Hidden Markov Model in bisulfite sequencing data.

Author: Farhad Shokoohi

Maintainer: Farhad Shokoohi <shokoohi at icloud.com>

Citation (from within R, enter citation("DMCHMM")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("DMCHMM")

For older versions of R, please refer to the appropriate Bioconductor release.

Reference Manual PDF

NEWS Text

Version 1.0.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License GPL-3

Imports utils, stats, grDevices, rtracklayer, multcomp, calibrate, graphics

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Suggests testthat, knitr

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Follow Installation instructions to use this package in your R session.

Source Package DMCHMM_1.0.0.tar.gz

Windows Binary DMCHMM_1.0.0.zip

Mac OS X 10.11 (El Capitan) DMCHMM_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/DMCHMM

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DMCHMM

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Old Source Packages for BioC 3.6 Source Archive