ClusterJudge

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see ClusterJudge.

Judging Quality of Clustering Methods using Mutual Information

Bioconductor version: 3.6

ClusterJudge implements the functions, examples and other software published as an algorithm by Gibbons, FD and Roth FP. The article is called "Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation" and it appeared in Genome Research, vol. 12, pp1574-1581 (2002). See package?ClusterJudge for an overview.

Author: Adrian Pasculescu

Maintainer: Adrian Pasculescu <pasculescu at lunenfeld.ca>

Citation (from within R, enter citation("ClusterJudge")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ClusterJudge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, GO, GeneExpression, Software, StatisticalMethod

Version 1.0.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License Artistic-2.0

Depends R (>= 3.4), stats, utils, graphics, infotheo, lattice, latticeExtra, httr, jsonlite

Imports

System Requirements

URL

Suggests yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ClusterJudge_1.0.0.tar.gz

Windows Binary ClusterJudge_1.0.0.zip

Mac OS X 10.11 (El Capitan) ClusterJudge_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ClusterJudge

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ClusterJudge

Package Short Url https://bioconductor.org/packages/ClusterJudge/

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Old Source Packages for BioC 3.6 Source Archive