CancerInSilico

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see CancerInSilico.

An R interface for computational modeling of tumor progression

Bioconductor version: 3.6

The CancerInSilico package provides an R interface for running mathematical models of tumor progresson. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.

Author: Thomas D. Sherman, Raymond Cheng, Elana J. Fertig

Maintainer: Thomas D. Sherman <tsherma4 at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Citation (from within R, enter citation("CancerInSilico")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CancerInSilico")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, CellBiology, MathematicalBiology, Software, SystemsBiology

Version 1.4.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License GPL (>= 2)

Depends Rcpp

Imports methods, grDevices, graphics, stats

System Requirements

URL

Suggests testthat, knitr, rmarkdown, BiocStyle

Linking To Rcpp, testthat, BH

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CancerInSilico_1.4.0.tar.gz

Windows Binary CancerInSilico_1.4.0.zip (32- & 64-bit)

Mac OS X 10.11 (El Capitan) CancerInSilico_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CancerInSilico

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CancerInSilico

Package Short Url https://bioconductor.org/packages/CancerInSilico/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.6 Source Archive