CNEr

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see CNEr.

CNE Detection and Visualization

Bioconductor version: 3.6

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

Author: Ge Tan <ge_tan at live.com>

Maintainer: Ge Tan <ge_tan at live.com>

Citation (from within R, enter citation("CNEr")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CNEr")

For older versions of R, please refer to the appropriate Bioconductor release.

Reference Manual PDF

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LICENSE Text

Version 1.14.0

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License GPL-2 | file LICENSE

Depends R (>= 3.4)

Imports Biostrings(>= 2.33.4), DBI (>= 0.7), RSQLite (>= 0.11.4), GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.23.16), rtracklayer(>= 1.25.5), XVector(>= 0.5.4), GenomicAlignments(>= 1.1.9), methods, S4Vectors(>= 0.13.13), IRanges(>= 2.5.27), readr (>= 0.2.2), BiocGenerics, tools, parallel, reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0), poweRlaw (>= 0.60.3), annotate(>= 1.50.0), GO.db(>= 3.3.0), R.utils (>= 2.3.0), KEGGREST(>= 1.14.0)

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