To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopyhelpeR")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.
Author: Thomas Kuilman
Maintainer: Thomas Kuilman <t.kuilman at nki.nl>
Citation (from within R,
enter citation("CopyhelpeR")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopyhelpeR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyhelpeR")
Follow Installation instructions to use this package in your R session.
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