To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("switchde")

In most cases, you don't need to download the package archive at all.

switchde

DOI: 10.18129/B9.bioc.switchde

Switch-like differential expression across single-cell trajectories

Bioconductor version: Release (3.5)

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("switchde")

Documentation

HTML R Script An overview of the switchde package
PDF Reference Manual
Text NEWS

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Regression, Software, Transcriptomics
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL (>= 2)
Depends R (>= 3.3)
Imports Biobase, dplyr, ggplot2, methods, stats
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr, scater
SystemRequirements
Enhances
URL https://github.com/kieranrcampbell/switchde
BugReports https://github.com/kieranrcampbell/switchde
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchde_1.2.0.tar.gz
Windows Binary switchde_1.2.0.zip
Mac OS X 10.11 (El Capitan) switchde_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchde
Package Short Url http://bioconductor.org/packages/switchde/
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