To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("safe")

In most cases, you don't need to download the package archive at all.

safe

DOI: 10.18129/B9.bioc.safe

Significance Analysis of Function and Expression

Bioconductor version: Release (3.5)

SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Author: William T. Barry

Maintainer: William T. Barry <bbarry at jimmy.harvard.edu>

Citation (from within R, enter citation("safe")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("safe")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("safe")
PDF R Script SAFE manual
PDF Reference Manual

Details

Version 3.16.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 12.5 years)
License GPL (>= 2)
Depends R (>= 2.4.0), AnnotationDbi, Biobase, methods, SparseM
Imports
LinkingTo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me EGSEA, EnrichmentBrowser
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package safe_3.16.0.tar.gz
Windows Binary safe_3.16.0.zip
Mac OS X 10.11 (El Capitan) safe_3.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/safe
Package Downloads Report Download Stats

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