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To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("prebs")

In most cases, you don't need to download the package archive at all.

DOI: 10.18129/B9.bioc.prebs

Probe region expression estimation for RNA-seq data for improved microarray comparability

Bioconductor version: Release (3.5)

The prebs package aims at making RNA-sequencing (RNA-seq) data more comparable to microarray data. The comparability is achieved by summarizing sequencing-based expressions of probe regions using a modified version of RMA algorithm. The pipeline takes mapped reads in BAM format as an input and produces either gene expressions or original microarray probe set expressions as an output.

Author: Karolis Uziela and Antti Honkela

Maintainer: Karolis Uziela <karolis.uziela at scilifelab.se>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("prebs")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("prebs")

Details

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Follow Installation instructions to use this package in your R session.

Source Repository git clone https://git.bioconductor.org/packages/prebs

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