To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("conumee")

In most cases, you don't need to download the package archive at all.

conumee

DOI: 10.18129/B9.bioc.conumee

Enhanced copy-number variation analysis using Illumina DNA methylation arrays

Bioconductor version: Release (3.5)

This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.

Author: Volker Hovestadt, Marc Zapatka

Maintainer: Volker Hovestadt <conumee at hovestadt.bio>

Citation (from within R, enter citation("conumee")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("conumee")

Documentation

HTML R Script conumee
PDF Reference Manual
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Details

biocViews CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Imports methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, minfiData, RCurl
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package conumee_1.10.0.tar.gz
Windows Binary conumee_1.10.0.zip
Mac OS X 10.11 (El Capitan) conumee_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/conumee
Package Short Url http://bioconductor.org/packages/conumee/
Package Downloads Report Download Stats

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