To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")

In most cases, you don't need to download the package archive at all.

affypdnn

DOI: 10.18129/B9.bioc.affypdnn

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Bioconductor version: Release (3.5)

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at gmail.com>

Citation (from within R, enter citation("affypdnn")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("affypdnn")
PDF R Script affypdnn
PDF Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.50.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 12.5 years)
License LGPL
Depends R (>= 2.13.0), affy(>= 1.5)
Imports
LinkingTo
Suggests affydata, hgu95av2probe
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affypdnn_1.50.0.tar.gz
Windows Binary affypdnn_1.50.0.zip
Mac OS X 10.11 (El Capitan) affypdnn_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affypdnn
Package Short Url http://bioconductor.org/packages/affypdnn/
Package Downloads Report Download Stats

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