To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("STROMA4")
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Bioconductor version: Release (3.5)
This package estimates four stromal properties identified in TNBC patients in each patient of a gene expression datasets. These stromal property assignments can be combined to subtype patients. These four stromal properties were identified in Triple negative breast cancer (TNBC) patients and represent the presence of different cells in the stroma: T-cells (T), B-cells (B), stromal infiltrating epithelial cells (E), and desmoplasia (D). Additionally this package can also be used to estimate generative properties for the Lehmann subtypes, an alternative TNBC subtyping scheme (PMID: 21633166).
Author: Sadiq Saleh [aut, cre], Michael Hallett [aut]
Maintainer: Sadiq Saleh <sadiq.mehdiismailsaleh at mail.mcgill.ca>
Citation (from within R,
enter citation("STROMA4")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("STROMA4")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("STROMA4")
Follow Installation instructions to use this package in your R session.
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