To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPchip")

In most cases, you don't need to download the package archive at all.

SNPchip

Visualizations for copy number alterations

Bioconductor version: Release (3.5)

Functions for plotting SNP array data; maintained for historical reasons

Author: Robert Scharpf <rscharpf at jhu.edu> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at jhu.edu>

Citation (from within R, enter citation("SNPchip")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPchip")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNPchip")

PDF R Script Plotting Idiograms

PDF Reference Manual

Version 2.22.0

In Bioconductor since BioC 2.0 (R-2.5) (10.5 years)

License LGPL (>= 2)

Depends R (>= 2.14.0)

LinkingTo

Suggests crlmm(>= 1.17.14), RUnit

SystemRequirements

Enhances doSNOW, VanillaICE(>= 1.21.24), RColorBrewer

Depends On Me mBPCR

Imports Me crlmm, phenoTest

Follow Installation instructions to use this package in your R session.

Windows Binary SNPchip_2.22.0.zip

Mac OS X 10.11 (El Capitan) SNPchip_2.22.0.tgz

Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: