To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HCsnip")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Decompose given hierarchical clustering tree into non-overlapping clusters in a semi-supervised way by using available patients follow-up information as guidance. Contains functions for snipping HC tree, various cluster quality evaluation criteria, assigning new patients to one of the two given HC trees, testing the significance of clusters with permutation argument and clusters visualization using sample's molecular entropy.
Author: Askar Obulkasim
Maintainer: Askar Obulkasim <askar703 at gmail.com>
Citation (from within R,
enter citation("HCsnip")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HCsnip")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HCsnip")
Follow Installation instructions to use this package in your R session.
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