To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GoogleGenomics")

In most cases, you don't need to download the package archive at all.

GoogleGenomics

DOI: 10.18129/B9.bioc.GoogleGenomics

R Client for Google Genomics API

Bioconductor version: Release (3.5)

Provides an R package to interact with the Google Genomics API.

Author: Cassie Doll [aut], Nicole Deflaux [aut], Siddhartha Bagaria [aut, cre]

Maintainer: Siddhartha Bagaria <sidb at google.com>

Citation (from within R, enter citation("GoogleGenomics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GoogleGenomics")

Documentation

HTML R Script Annotating Variants
HTML R Script Plotting Alignments
HTML R Script Reproducing Variant Annotation Results
PDF Reference Manual
Text NEWS
Text LICENSE

Details

biocViews DataImport, Genetics, Software, ThirdPartyClient
Version 1.8.1
In Bioconductor since BioC 3.1 (R-3.2) (2.5 years)
License Apache License (== 2.0) | file LICENSE
Depends R (>= 3.1.0), GenomicAlignments(>= 1.0.1), VariantAnnotation
Imports Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson, Rsamtools, S4Vectors(>= 0.9.25), Biobase, methods
LinkingTo
Suggests BiocStyle, httpuv, knitr, rmarkdown, testthat, ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://cloud.google.com/genomics/
BugReports https://github.com/Bioconductor/GoogleGenomics/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GoogleGenomics_1.8.1.tar.gz
Windows Binary GoogleGenomics_1.8.1.zip
Mac OS X 10.11 (El Capitan) GoogleGenomics_1.8.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GoogleGenomics
Package Short Url http://bioconductor.org/packages/GoogleGenomics/
Package Downloads Report Download Stats

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