To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHcall")

In most cases, you don't need to download the package archive at all.

CGHcall

DOI: 10.18129/B9.bioc.CGHcall

Calling aberrations for array CGH tumor profiles.

Bioconductor version: Release (3.5)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHcall")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHcall")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("CGHcall")
PDF R Script CGHcall
PDF Reference Manual

Details

biocViews Microarray, Preprocessing, Software, Visualization
Version 2.38.0
In Bioconductor since BioC 2.1 (R-2.6) (10 years)
License GPL (http://www.gnu.org/copyleft/gpl.html)
Depends R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me CGHnormaliter, focalCall, GeneBreak
Imports Me CGHnormaliter, QDNAseq
Suggests Me sigaR
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CGHcall_2.38.0.tar.gz
Windows Binary CGHcall_2.38.0.zip
Mac OS X 10.11 (El Capitan) CGHcall_2.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGHcall
Package Short Url http://bioconductor.org/packages/CGHcall/
Package Downloads Report Download Stats

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