BiocCaseStudies
DOI:
10.18129/B9.bioc.BiocCaseStudies
BiocCaseStudies: Support for the Case Studies Monograph
Bioconductor version: Release (3.5)
Software and data to support the case studies.
Author: R. Gentleman, W. Huber, F. Hahne, M. Morgan, S. Falcon
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("BiocCaseStudies")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocCaseStudies")
Documentation
Details
Version
1.38.0
In Bioconductor since
BioC 2.2 (R-2.7) (9.5 years)
License
Artistic-2.0
Depends
tools, methods, utils,
Biobase
Imports
LinkingTo
Suggests
affy(>= 1.17.3),
affyPLM(>= 1.15.1),
affyQCReport(>= 1.17.0),
ALL(>= 1.4.3),
annaffy(>= 1.11.1),
annotate(>= 1.17.3),
AnnotationDbi(>= 1.1.6),
apComplex(>= 2.5.0),
Biobase(>= 1.17.5),
bioDist(>= 1.11.3),
biocGraph(>= 1.1.1),
biomaRt(>= 1.13.5),
CCl4(>= 1.0.6),
CLL(>= 1.2.4),
Category(>= 2.5.0),
class (>= 7.2-38),
cluster (>= 1.11.9),
convert(>= 1.15.0),
gcrma(>= 2.11.1),
genefilter(>= 1.17.6),
geneplotter(>= 1.17.2),
GO.db(>= 2.0.2),
GOstats(>= 2.5.0),
graph(>= 1.17.4),
GSEABase(>= 1.1.13),
hgu133a.db(>= 2.0.2),
hgu95av2.db,
hgu95av2cdf(>= 2.0.0),
hgu95av2probe(>= 2.0.0),
hopach(>= 1.13.0),
KEGG.db(>= 2.0.2),
kohonen (>= 2.0.2),
lattice (>= 0.17.2),
latticeExtra (>= 0.3-1),
limma(>= 2.13.1),
MASS (>= 7.2-38),
MLInterfaces(>= 1.13.17),
multtest(>= 1.19.0),
org.Hs.eg.db(>= 2.0.2),
ppiStats(>= 1.5.4),
randomForest (>= 4.5-20),
RBGL(>= 1.15.6),
RColorBrewer (>= 1.0-2),
Rgraphviz(>= 1.17.11),
vsn(>= 3.4.0),
weaver(>= 1.5.0),
xtable (>= 1.5-2),
yeastExpData(>= 0.9.11)
SystemRequirements
Enhances
Depends On Me
Imports Me
Suggests Me
Package Archives
Follow
Installation instructions to use this
package in your R session.
Source Repository
git clone https://git.bioconductor.org/packages/BiocCaseStudies