To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")
In most cases, you don't need to download the package archive at all.
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see pasillaBamSubset.
Bioconductor version: 3.4
Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.
Author: H. Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("pasillaBamSubset")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pasillaBamSubset")
Follow Installation instructions to use this package in your R session.
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