To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.methylation")

In most cases, you don't need to download the package archive at all.

RTCGA.methylation

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see RTCGA.methylation.

Methylation datasets from The Cancer Genome Atlas Project

Bioconductor version: 3.4

Package provides methylation (humanmethylation27) datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/DNA+methylation Data from 2015年11月01日 snapshot.

Author: Marcin Kosinski [aut, cre], Witold Chodor [aut]

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.methylation")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.methylation")

Documentation

HTML R Script Using RTCGA to download methylation data as included in RTCGA.methylation
PDF Reference Manual
Text NEWS

Details

biocViews AnnotationData, ExperimentData
Version 1.2.0
License GPL-2
Depends R (>= 3.3.0), RTCGA
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
BugReports https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me RTCGA
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RTCGA.methylation_1.2.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/RTCGA.methylation/
Package Downloads Report Download Stats

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