To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splineTimeR")

In most cases, you don't need to download the package archive at all.

splineTimeR

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see splineTimeR.

Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction

Bioconductor version: 3.4

This package provides functions for differential gene expression analysis of gene expression time-course data. Natural cubic spline regression models are used. Identified genes may further be used for pathway enrichment analysis and/or the reconstruction of time dependent gene regulatory association networks.

Author: Agata Michna

Maintainer: Herbert Braselmann <braselm at helmholtz-muenchen.de>

Citation (from within R, enter citation("splineTimeR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("splineTimeR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("splineTimeR")
PDF R Script splineTimeR
PDF Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, NetworkEnrichment, NetworkInference, Regression, Software, TimeCourse
Version 1.2.0
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License GPL-3
Depends R (>= 3.3), Biobase, igraph, limma, GSEABase, gtools, splines, GeneNet (>= 1.2.13), longitudinal (>= 1.1.12), FIs
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source splineTimeR_1.2.0.tar.gz
Windows Binary splineTimeR_1.2.0.zip
Mac OS X 10.9 (Mavericks) splineTimeR_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/splineTimeR/tree/release-3.4
Package Short Url http://bioconductor.org/packages/splineTimeR/
Package Downloads Report Download Stats

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