To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdInfoBuilder")

In most cases, you don't need to download the package archive at all.

pdInfoBuilder

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see pdInfoBuilder.

Platform Design Information Package Builder

Bioconductor version: 3.4

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com>

Citation (from within R, enter citation("pdInfoBuilder")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdInfoBuilder")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("pdInfoBuilder")
PDF Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF R Script PDInfo Package Building Affymetrix Mapping Chips
PDF Reference Manual
Text NEWS

Details

biocViews Annotation, Infrastructure, Software
Version 1.38.0
In Bioconductor since BioC 2.0 (R-2.5) (10 years)
License Artistic-2.0
Depends R (>= 3.2.0), methods, Biobase(>= 2.27.3), RSQLite (>= 1.0.0), affxparser(>= 1.39.4), oligo(>= 1.31.5)
Imports Biostrings(>= 2.35.12), BiocGenerics(>= 0.13.11), DBI (>= 0.3.1), IRanges(>= 2.1.43), oligoClasses(>= 1.29.6), S4Vectors(>= 0.5.22)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me maqcExpression4plex
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pdInfoBuilder_1.38.0.tar.gz
Windows Binary pdInfoBuilder_1.38.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) pdInfoBuilder_1.38.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/pdInfoBuilder/tree/release-3.4
Package Short Url http://bioconductor.org/packages/pdInfoBuilder/
Package Downloads Report Download Stats

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