To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("illuminaio")

In most cases, you don't need to download the package archive at all.

illuminaio

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see illuminaio.

Parsing Illumina Microarray Output Files

Bioconductor version: 3.4

Tools for parsing Illumina's microarray output files, including IDAT.

Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("illuminaio")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("illuminaio")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("illuminaio")
PDF Description of Encrypted IDAT Format
PDF R Script Introduction to illuminaio
PDF Reference Manual
Text NEWS

Details

biocViews DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software
Version 0.16.0
In Bioconductor since BioC 2.12 (R-3.0) (4 years)
License GPL-2
Depends
Imports base64
LinkingTo
Suggests RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle
SystemRequirements
Enhances
URL https://github.com/HenrikBengtsson/illuminaio
BugReports https://github.com/HenrikBengtsson/illuminaio/issues
Depends On Me normalize450K, RnBeads, wateRmelon
Imports Me beadarray, crlmm, methylumi, minfi
Suggests Me limma
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source illuminaio_0.16.0.tar.gz
Windows Binary illuminaio_0.16.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) illuminaio_0.16.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/illuminaio/tree/release-3.4
Package Short Url http://bioconductor.org/packages/illuminaio/
Package Downloads Report Download Stats

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