To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

In most cases, you don't need to download the package archive at all.

ggtree

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see ggtree.

an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

Bioconductor version: 3.4

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees with their covariates and other associated data.

Author: Guangchuang Yu and Tommy Tsan-Yuk Lam

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtree")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

Documentation

HTML R Script 00 ggtree introduction
HTML R Script 01 Tree Data Import
HTML R Script 02 Tree Visualization
HTML R Script 03 Tree Manipulation
HTML R Script 04 Tree Annotation
HTML R Script 05 Advance Tree Annotation
HTML R Script 06 ggtree utilities
PDF Reference Manual
Text NEWS

Details

biocViews Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
Version 1.6.11
In Bioconductor since BioC 3.1 (R-3.2) (2 years)
License Artistic-2.0
Depends R (>= 3.3.1), ggplot2 (>= 2.2.0)
Imports ape, grDevices, grid, jsonlite, magrittr, methods, stats4, tidyr, utils
LinkingTo
Suggests Biostrings, colorspace, EBImage, emojifont, knitr, rmarkdown, scales, testthat
SystemRequirements
Enhances
URL https://guangchuangyu.github.io/ggtree
BugReports https://github.com/GuangchuangYu/ggtree/issues
Depends On Me
Imports Me LINC, philr
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ggtree_1.6.11.tar.gz
Windows Binary ggtree_1.6.11.zip
Mac OS X 10.9 (Mavericks) ggtree_1.6.11.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ggtree/tree/release-3.4
Package Short Url http://bioconductor.org/packages/ggtree/
Package Downloads Report Download Stats

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