To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("InteractionSet")

In most cases, you don't need to download the package archive at all.

InteractionSet

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see InteractionSet.

Base Classes for Storing Genomic Interaction Data

Bioconductor version: 3.4

Provides the GInteractions, InteractionSet and ContactMatrix objects and associated methods for storing and manipulating genomic interaction data from Hi-C and ChIA-PET experiments.

Author: Aaron Lun <alun at wehi.edu.au>, Malcolm Perry <mgperry32 at gmail.com>, Liz Ing-Simmons <liz.ing-simmons12 at csc.mrc.ac.uk>

Maintainer: Aaron Lun <alun at wehi.edu.au>

Citation (from within R, enter citation("InteractionSet")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("InteractionSet")

Documentation

HTML R Script Interacting with InteractionSet classes for genomic interaction data
PDF Reference Manual
Text NEWS

Details

biocViews DataRepresentation, HiC, Infrastructure, Software
Version 1.2.1
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License GPL-3
Depends R (>= 3.3.0), GenomicRanges, SummarizedExperiment(>= 1.1.6)
Imports IRanges, S4Vectors(>= 0.9.24), GenomeInfoDb, BiocGenerics, methods, Matrix
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me diffHic, GenomicInteractions
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source InteractionSet_1.2.1.tar.gz
Windows Binary InteractionSet_1.2.1.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) InteractionSet_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/InteractionSet/tree/release-3.4
Package Short Url http://bioconductor.org/packages/InteractionSet/
Package Downloads Report Download Stats

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