To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

In most cases, you don't need to download the package archive at all.

GGtools

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see GGtools.

software and data for analyses in genetics of gene expression

Bioconductor version: 3.4

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGtools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GGtools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("GGtools")
PDF R Script GGtools: software for eQTL identification
PDF Reference Manual
Text README
Text NEWS

Details

biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 5.10.1
In Bioconductor since BioC 1.9 (R-2.4) (10.5 years)
License Artistic-2.0
Depends R (>= 2.14), GGBase(>= 3.19.7), data.table, parallel, Homo.sapiens
Imports methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools, AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin, rtracklayer, Gviz, stats4, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, iterators, Biostrings, ROCR, biglm, ggplot2, reshape2
LinkingTo
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37, multtest, aod, rmeta
SystemRequirements
Enhances MatrixEQTL, foreach, doParallel, gwascat
URL
Depends On Me ceu1kg, cheung2010
Imports Me ceuhm3, GeneGeneInteR
Suggests Me cgdv17, dsQTL, GGBase, gQTLBase, gwascat, hmyriB36
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GGtools_5.10.1.tar.gz
Windows Binary GGtools_5.10.1.zip
Mac OS X 10.9 (Mavericks) GGtools_5.10.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GGtools/tree/release-3.4
Package Short Url http://bioconductor.org/packages/GGtools/
Package Downloads Report Download Stats

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