To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNEr")

In most cases, you don't need to download the package archive at all.

CNEr

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see CNEr.

CNE Detection and Visualization

Bioconductor version: 3.4

Large-scale identification and advanced visualization of sets of conserved noncoding elements.

Author: Ge Tan <ge.tan09 at imperial.ac.uk>

Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>

Citation (from within R, enter citation("CNEr")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNEr")

HTML R Script CNE identification and visualisation

HTML R Script Pairwise whole genome alignment

PDF Reference Manual

Text NEWS

Text LICENSE

Version 1.10.2

In Bioconductor since BioC 2.14 (R-3.1) (3 years)

License GPL-2 | file LICENSE

Depends R (>= 3.2.2)

Imports Biostrings(>= 2.33.4), RSQLite (>= 0.11.4), GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.23.16), rtracklayer(>= 1.25.5), XVector(>= 0.5.4), GenomicAlignments(>= 1.1.9), methods, S4Vectors(>= 0.9.25), IRanges(>= 2.5.27), readr (>= 0.2.2), BiocGenerics, tools, parallel, reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0), poweRlaw (>= 0.60.3), annotate(>= 1.50.0), GO.db(>= 3.3.0), R.utils (>= 2.3.0), KEGGREST(>= 1.14.0)

SystemRequirements

Enhances

Depends On Me

Imports Me TFBSTools

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