To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ArrayExpress")

In most cases, you don't need to download the package archive at all.

ArrayExpress

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: 3.4

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert

Maintainer: Ugis Sarkans <ugis at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ArrayExpress")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("ArrayExpress")
PDF R Script ArrayExpress: Import and convert ArrayExpress data sets into R object
PDF Reference Manual

Details

biocViews DataImport, Microarray, OneChannel, Software, TwoChannel
Version 1.34.0
In Bioconductor since BioC 2.3 (R-2.8) (8.5 years)
License Artistic-2.0
Depends R (>= 2.9.0), Biobase(>= 2.4.0)
Imports XML, oligo, limma
LinkingTo
Suggests affy
SystemRequirements
Enhances
URL
Depends On Me DrugVsDisease
Imports Me
Suggests Me gCMAPWeb, Hiiragi2013
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ArrayExpress_1.34.0.tar.gz
Windows Binary ArrayExpress_1.34.0.zip
Mac OS X 10.9 (Mavericks) ArrayExpress_1.34.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ArrayExpress/tree/release-3.4
Package Short Url http://bioconductor.org/packages/ArrayExpress/
Package Downloads Report Download Stats

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