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scaeData
This is the released version of scaeData; for the devel version, see scaeData.
Data Package for SingleCellAlleleExperiment
Bioconductor version: Release (3.22)
Contains default datasets used by the Bioconductor package SingleCellAlleleExperiment. The raw FASTQ files were sourced from publicly accessible datasets provided by 10x Genomics. Subsequently, our scIGD snakemake workflow was employed to process these FASTQ files. The resulting output from scIGD constitutes to the contents of this data package.
Author: Ahmad Al Ajami [aut, cre] ORCID iD ORCID: 0009-0006-5615-7447 , Jonas Schuck [aut] ORCID iD ORCID: 0009-0003-5705-4579 , Federico Marini [aut] ORCID iD ORCID: 0000-0003-3252-7758 , Katharina Imkeller [aut] ORCID iD ORCID: 0000-0002-5177-0852
Maintainer: Ahmad Al Ajami <alajami at med.uni-frankfurt.de>
citation("scaeData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scaeData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scaeData")
Details
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Follow Installation instructions to use this package in your R session.