- Home
- Bioconductor 3.22
- Experiment Packages
- imcdatasets
imcdatasets
This is the released version of imcdatasets; for the devel version, see imcdatasets.
Collection of publicly available imaging mass cytometry (IMC) datasets
Bioconductor version: Release (3.22)
The imcdatasets package provides access to publicly available IMC datasets. IMC is a technology that enables measurement of> 40 proteins from tissue sections. The generated images can be segmented to extract single cell data. Datasets typically consist of three elements: a SingleCellExperiment object containing single cell data, a CytoImageList object containing multichannel images and a CytoImageList object containing the cell masks that were used to extract the single cell data from the images.
Author: Nicolas Damond [aut, cre] ORCID iD ORCID: 0000-0003-3027-8989 , Nils Eling [ctb] ORCID iD ORCID: 0000-0002-4711-1176 , Fischer Jana [ctb] ORCID iD ORCID: 0000-0001-9047-8400
Maintainer: Nicolas Damond <nicolas.damond at dqbm.uzh.ch>
citation("imcdatasets")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("imcdatasets")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("imcdatasets")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.