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gDNAinRNAseqData
This is the released version of gDNAinRNAseqData; for the devel version, see gDNAinRNAseqData.
RNA-seq data with different levels of gDNA contamination
Bioconductor version: Release (3.22)
Provides access to BAM files generated from RNA-seq data produced with different levels of gDNA contamination. It currently allows one to download a subset of the data published by Li et al., BMC Genomics, 23:554, 2022. This subset of data is formed by BAM files with about 100,000 alignments with three different levels of gDNA contamination.
Author: Robert Castelo [aut, cre] ORCID iD ORCID: 0000-0003-2229-4508
Maintainer: Robert Castelo <robert.castelo at upf.edu>
citation("gDNAinRNAseqData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDNAinRNAseqData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDNAinRNAseqData")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.