furrowSeg

This is the released version of furrowSeg; for the devel version, see furrowSeg.

Furrow Segmentation

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DOI: 10.18129/B9.bioc.furrowSeg

Bioconductor version: Release (3.22)

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("furrowSeg")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("furrowSeg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("furrowSeg")

Supplementary Methods - Automatic generation of paper figures PDF R Script

Supplementary Methods - Example furrow segmentation PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue

Version 1.38.0

License Artistic-2.0

Depends R (>= 3.3), EBImage

Imports abind, dplyr, locfit, tiff

System Requirements

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Suggests BiocStyle, ggplot2, knitr

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Follow Installation instructions to use this package in your R session.

Source Package furrowSeg_1.38.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/furrowSeg

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/furrowSeg

Package Short Url https://bioconductor.org/packages/furrowSeg/

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