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RcisTarget.hg19.motifDBs.cisbpOnly.500bp
This is the released version of RcisTarget.hg19.motifDBs.cisbpOnly.500bp; for the devel version, see RcisTarget.hg19.motifDBs.cisbpOnly.500bp.
RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs
DOI: 10.18129/B9.bioc.RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Bioconductor version: Release (3.22)
RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.
Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.
Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>
citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Details
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Follow Installation instructions to use this package in your R session.