RTCGA.miRNASeq

This is the released version of RTCGA.miRNASeq; for the devel version, see RTCGA.miRNASeq.

miRNASeq datasets from The Cancer Genome Atlas Project

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DOI: 10.18129/B9.bioc.RTCGA.miRNASeq

Bioconductor version: Release (3.22)

Package provides miRNASeq datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/miRNASeq#miRNASeq-DataOverview Data from 2015年11月01日 snapshot.

Author: Witold Chodor <witoldchodor at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.miRNASeq")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RTCGA.miRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.miRNASeq")

Using RTCGA to download miRNASeq data as included in RTCGA.miRNASeq HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, ExperimentData

Version 1.38.0

License GPL-2

Depends R (>= 3.3.0), RTCGA

Imports

System Requirements

URL

Bug Reports https://github.com/RTCGA/RTCGA/issues

Suggests knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me RTCGA

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.miRNASeq_1.38.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/RTCGA.miRNASeq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.miRNASeq

Package Short Url https://bioconductor.org/packages/RTCGA.miRNASeq/

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