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NanoporeRNASeq
This is the released version of NanoporeRNASeq; for the devel version, see NanoporeRNASeq.
Nanopore RNA-Seq Example data
Bioconductor version: Release (3.22)
The NanoporeRNASeq package contains long read RNA-Seq data generated using Oxford Nanopore Sequencing. The data consists of 6 samples from two human cell lines (K562 and MCF7) that were generated by the SG-NEx project. Each of these cell lines has three replicates, with 1 direct RNA sequencing data and 2 cDNA sequencing data. Reads are aligned to chromosome 22 (Grch38) and stored as bam files. The original data is from the SG-NEx project.
Author: Jonathan Goeke [aut], Ying Chen [cre], Yuk Kei Wan [aut]
Maintainer: Ying Chen <chen_ying at gis.a-star.edu.sg>
citation("NanoporeRNASeq")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NanoporeRNASeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoporeRNASeq")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.