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AWAggregatorData
This is the released version of AWAggregatorData; for the devel version, see AWAggregatorData.
Attribute-Weighted Aggregation Data
Bioconductor version: Release (3.22)
The AWAggregatorData package contains the data associated with the AWAggregator R package. It includes two pre-trained random forest models, one incorporating the average coefficient of variation as a feature, and the other one not including it. It also contains the PSMs in Benchmark Set 1~3 derived from the psm.tsv output files generated by FragPipe, which are used to train the random forest models.
Author: Jiahua Tan [aut, cre] ORCID iD ORCID: 0000-0001-5839-1049 , Gian L. Negri [aut] ORCID iD ORCID: 0000-0001-7722-8888 , Gregg B. Morin [aut] ORCID iD ORCID: 0000-0001-8949-4374 , David D. Y. Chen [aut] ORCID iD ORCID: 0000-0002-3669-6041
Maintainer: Jiahua Tan <jiahuatan at chem.ubc.ca>
citation("AWAggregatorData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AWAggregatorData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AWAggregatorData")
Details
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Follow Installation instructions to use this package in your R session.