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topconfects
This is the released version of topconfects; for the devel version, see topconfects.
Top Confident Effect Sizes
Bioconductor version: Release (3.22)
Rank results by confident effect sizes, while maintaining False Discovery Rate and False Coverage-statement Rate control. Topconfects is an alternative presentation of TREAT results with improved usability, eliminating p-values and instead providing confidence bounds. The main application is differential gene expression analysis, providing genes ranked in order of confident log2 fold change, but it can be applied to any collection of effect sizes with associated standard errors.
Author: Paul Harrison [aut, cre] ORCID iD ORCID: 0000-0002-3980-268X
Maintainer: Paul Harrison <paul.harrison at monash.edu>
citation("topconfects")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("topconfects")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("topconfects")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.