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ontoProc
This is the released version of ontoProc; for the devel version, see ontoProc.
processing of ontologies of anatomy, cell lines, and so on
Bioconductor version: Release (3.22)
Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies.
Author: Vincent Carey [ctb, cre] ORCID iD ORCID: 0000-0003-4046-0063 , Sara Stankiewicz [ctb], Victor Tarca [ctb] ORCID iD ORCID: 0009-0003-1976-0392
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
citation("ontoProc")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ontoProc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ontoProc")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.