miaSim
This is the released version of miaSim; for the devel version, see miaSim.
Microbiome Data Simulation
Bioconductor version: Release (3.22)
Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to (Tree)SummarizedExperiment objects.
Author: Yagmur Simsek [cre, aut], Karoline Faust [aut], Yu Gao [aut], Emma Gheysen [aut], Daniel Rios Garza [aut], Tuomas Borman [aut] ORCID iD ORCID: 0000-0002-8563-8884 , Leo Lahti [aut] ORCID iD ORCID: 0000-0001-5537-637X , Geraldson Muluh [ctb], Akewak Jeba [ctb] ORCID iD ORCID: 0009-0007-1347-7552
Maintainer: Yagmur Simsek <yagmur.simsek.98 at gmail.com>
citation("miaSim")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miaSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miaSim")
Details
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Follow Installation instructions to use this package in your R session.