miRNAtap

This is the released version of miRNAtap; for the devel version, see miRNAtap.

miRNAtap: microRNA Targets - Aggregated Predictions

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DOI: 10.18129/B9.bioc.miRNAtap

Bioconductor version: Release (3.22)

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Author: Maciej Pajak, T. Ian Simpson

Maintainer: T. Ian Simpson <ian.simpson at ed.ac.uk>

Citation (from within R, enter citation("miRNAtap")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("miRNAtap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNAtap")

miRNAtap PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Microarray, Sequencing, Software, miRNA

Version 1.44.0

In Bioconductor since BioC 3.0 (R-3.1) (11 years)

License GPL-2

Depends R (>= 3.3.0), AnnotationDbi

Imports DBI, RSQLite, stringr, sqldf, plyr, methods

System Requirements

URL

Suggests topGO, org.Hs.eg.db, miRNAtap.db, testthat

Linking To

Enhances

Depends On Me miRNAtap.db

Imports Me miRNAtap.db

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRNAtap_1.44.0.tar.gz

Windows Binary (x86_64) miRNAtap_1.44.0.zip

macOS Binary (x86_64) miRNAtap_1.44.0.tgz

macOS Binary (arm64) miRNAtap_1.44.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/miRNAtap

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRNAtap

Bioc Package Browser https://code.bioconductor.org/browse/miRNAtap/

Package Short Url https://bioconductor.org/packages/miRNAtap/

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