limmaGUI

This is the released version of limmaGUI; for the devel version, see limmaGUI.

GUI for limma Package With Two Color Microarrays

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DOI: 10.18129/B9.bioc.limmaGUI

Bioconductor version: Release (3.22)

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("limmaGUI")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("limmaGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("limmaGUI")

about.html HTML

CustMenu.html HTML

Extracting limma objects from limmaGUI files PDF

import.html HTML

index.html HTML

InputFiles.html HTML

lgDevel.html HTML

limmaGUI Vignette PDF R Script

LinModIntro.pdf PDF

windowsFocus.html HTML

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray

Version 1.86.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20.5 years)

License GPL (>=2)

Depends

Imports methods, grDevices, graphics, limma, R2HTML, tcltk, tkrplot, xtable, utils

System Requirements

URL http://bioinf.wehi.edu.au/limmaGUI/

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package limmaGUI_1.86.0.tar.gz

Windows Binary (x86_64) limmaGUI_1.86.0.zip (64-bit only)

macOS Binary (x86_64) limmaGUI_1.86.0.tgz

macOS Binary (arm64) limmaGUI_1.86.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/limmaGUI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/limmaGUI

Bioc Package Browser https://code.bioconductor.org/browse/limmaGUI/

Package Short Url https://bioconductor.org/packages/limmaGUI/

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