ffpe
This is the released version of ffpe; for the devel version, see ffpe.
Quality assessment and control for FFPE microarray expression data
Bioconductor version: Release (3.22)
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
Author: Levi Waldron
Maintainer: Levi Waldron <lwaldron.research at gmail.com>
Citation (from within R, enter
citation("ffpe")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ffpe")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ffpe") Reference Manual
PDF
Details
Version
1.54.0
In Bioconductor since
BioC 2.10 (R-2.15) (13.5 years)
License
GPL (>2)
Depends
R (>= 2.10.0), TTR, methods
System Requirements
See More
Suggests
genefilter, ffpeExampleData
Linking To
Enhances
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Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
ffpe_1.54.0.tar.gz
Windows Binary (x86_64)
ffpe_1.54.0.zip
macOS Binary (x86_64)
ffpe_1.54.0.tgz
macOS Binary (arm64)
ffpe_1.54.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/ffpe
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/ffpe
Bioc Package Browser
https://code.bioconductor.org/browse/ffpe/
Package Short Url
https://bioconductor.org/packages/ffpe/
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