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epialleleR
This is the released version of epialleleR; for the devel version, see epialleleR.
Fast, Epiallele-Aware Methylation Caller and Reporter
Bioconductor version: Release (3.22)
Epialleles are specific DNA methylation patterns that are mitotically and/or meiotically inherited. This package calls and reports cytosine methylation as well as frequencies of hypermethylated epialleles at the level of genomic regions or individual cytosines in next-generation sequencing data using binary alignment map (BAM) files as an input. Among other things, this package can also extract and visualise methylation patterns and assess allele specificity of methylation.
Author: Oleksii Nikolaienko [aut, cre] ORCID iD ORCID: 0000-0002-5910-4934
Maintainer: Oleksii Nikolaienko <oleksii.nikolaienko at gmail.com>
citation("epialleleR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epialleleR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epialleleR")
Details
Package Archives
Follow Installation instructions to use this package in your R session.