biocViews

This is the released version of biocViews; for the devel version, see biocViews.

Categorized views of R package repositories

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DOI: 10.18129/B9.bioc.biocViews

Bioconductor version: Release (3.22)

Infrastructure to support 'views' used to classify Bioconductor packages. 'biocViews' are directed acyclic graphs of terms from a controlled vocabulary. There are three major classifications, corresponding to 'software', 'annotation', and 'experiment data' packages.

Author: Vincent Carey [aut], Benjamin Harshfield [aut], Seth Falcon [aut], Sonali Arora [aut], Lori Shepherd [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("biocViews")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("biocViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocViews")

biocViews-CreateRepositoryHTML HTML R Script

biocViews-HOWTO HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.78.0

In Bioconductor since BioC 1.8 (R-2.3) (19.5 years)

License Artistic-2.0

Depends R (>= 3.6.0)

Imports Biobase, graph(>= 1.9.26), methods, RBGL(>= 1.13.5), tools, utils, XML, RCurl, RUnit, BiocManager

System Requirements

URL http://bioconductor.org/packages/biocViews

Bug Reports https://github.com/Bioconductor/biocViews/issues

Suggests BiocGenerics, BiocPkgTools, knitr, commonmark, BiocStyle

Linking To

Enhances

Depends On Me

Imports Me AnnotationHubData, BiocCheck, BiocPkgTools, BioGA, monocle, sigFeature, RforProteomics, genetic.algo.optimizeR

Suggests Me packFinder, plasmut, ReducedExperiment, rworkflows

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocViews_1.78.0.tar.gz

Windows Binary (x86_64) biocViews_1.78.0.zip (64-bit only)

macOS Binary (x86_64) biocViews_1.78.0.tgz

macOS Binary (arm64) biocViews_1.78.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/biocViews

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biocViews

Bioc Package Browser https://code.bioconductor.org/browse/biocViews/

Package Short Url https://bioconductor.org/packages/biocViews/

Package Downloads Report Download Stats