ToxicoGx

This is the released version of ToxicoGx; for the devel version, see ToxicoGx.

Analysis of Large-Scale Toxico-Genomic Data

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DOI: 10.18129/B9.bioc.ToxicoGx

Bioconductor version: Release (3.22)

Contains a set of functions to perform large-scale analysis of toxicogenomic data, providing a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxicogenomic data.

Author: Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Jermiah Joseph [aut], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("ToxicoGx")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ToxicoGx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ToxicoGx")

ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpression, Pharmacogenetics, Pharmacogenomics, Software

Version 2.14.0

In Bioconductor since BioC 3.12 (R-4.0) (5 years)

License MIT + file LICENSE

Depends R (>= 4.1), CoreGx

Imports SummarizedExperiment, BiocGenerics, S4Vectors, Biobase, BiocParallel, ggplot2, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, data.table, assertthat, scales, graphics, grDevices, parallel, stats, utils, limma, jsonlite

System Requirements

URL

Suggests rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools, PharmacoGx, xtable, markdown

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Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ToxicoGx_2.14.0.tar.gz

Windows Binary (x86_64) ToxicoGx_2.14.0.zip

macOS Binary (x86_64) ToxicoGx_2.14.0.tgz

macOS Binary (arm64) ToxicoGx_2.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ToxicoGx

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ToxicoGx

Bioc Package Browser https://code.bioconductor.org/browse/ToxicoGx/

Package Short Url https://bioconductor.org/packages/ToxicoGx/

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